If you would like to, in a shell script, dynamically generate SQL queries for MySQL and save the output of those queries to a variable that you can then use in the script, here is an example:
#!/bin/bash
for i in `cat tables_list.txt`
do
# Build the query
QUERY="SELECT count(*) FROM ${i}"
# Run the query from the command-line and save the
# output into the $ROW_COUNT variable
ROW_COUNT=$(echo $QUERY | mysql -u${USER_NAME} -p${PASSWORD} -h ${HOST} -P ${PORT} --skip-column-names ${DBASE})
# Do something with the var...
echo -n -e "$ROW_COUNT\t" >> $OUT_FILE
echo "$i" >> $OUT_FILE
done;